PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_24671A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family LBD
Protein Properties Length: 227aa    MW: 24098.9 Da    PI: 5.8518
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_24671AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.32.7e-38281291101
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                +C aCk+lrrkC+++C++apyf +e+ +++fa+vhk+FGasnv+kll+++pe++r da+ ++++eA++r+r+PvyG+v++i +l
  Oropetium_20150105_24671A  28 PCGACKFLRRKCVSECIFAPYFEQEHgAAHFAAVHKVFGASNVSKLLHQIPEDKRLDAVITVCFEAQCRLRNPVYGCVSHIIAL 111
                                7*********************999979******************************************************** PP

                     DUF260  84 qqqleqlkaelallkeel 101
                                q+q+ +l++el++++++l
  Oropetium_20150105_24671A 112 QEQITTLQSELNYVQNQL 129
                                **************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.25427129IPR004883Lateral organ boundaries, LOB
PfamPF031957.4E-3828126IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MFVGGTSSGG AGGXXXXXXX XXXXXXGPCG ACKFLRRKCV SECIFAPYFE QEHGAAHFAA  60
VHKVFGASNV SKLLHQIPED KRLDAVITVC FEAQCRLRNP VYGCVSHIIA LQEQITTLQS  120
ELNYVQNQLA AMEKQQSQVP PLPAFPQMSM SVGGFSDINL DLSFLLDEEA PPQQQQQHVN  180
MGAASRGAGG SGGVGDTGDL DALARELVRH GQEAGGSAPP PPGTYQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510942.12e-61PREDICTED: LOB domain-containing protein 30-like
RefseqXP_008776002.13e-61PREDICTED: LOB domain-containing protein 18-like
SwissprotO813231e-57LBD30_ARATH; LOB domain-containing protein 30
TrEMBLV4L2076e-61V4L207_EUTSA; Uncharacterized protein
STRINGGSMUA_Achr5P11330_0017e-59(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33463782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.13e-56LBD family protein